publications

publications by categories in reversed chronological order. generated by jekyll-scholar.

2025

  1. Ancient DNA reveals the prehistory of the Uralic and Yeniseian peoples.
    Nature, 2025
    DOI
  2. Genomic Analysis of Hair Sheep From West/Central Africa Reveals Unique Genetic Diversity and Ancestral Links to Breed Formation in the Caribbean.
    Mol Ecol, 2025
    DOI
  3. Performance of qpAdm-based screens for genetic admixture on graph-shaped histories and stepping stone landscapes.
    Genetics, 2025
    DOI
  4. Author Correction: The genetic origin of the Indo-Europeans.
    Nature, 2025
    DOI
  5. The genetic origin of the Indo-Europeans.
    Nature, 2025
    DOI
  6. Performance of qpAdm-based screens for genetic admixture on admixture-graph-shaped histories and stepping-stone landscapes.
    bioRxiv, 2025
    DOI

2024

  1. Long shared haplotypes identify the Southern Urals as a primary source for the 10th century Hungarians.
    bioRxiv, 2024
    DOI
  2. Testing times: disentangling admixture histories in recent and complex demographies using ancient DNA.
    Genetics, 2024
    DOI
  3. The Genetic Origin of the Indo-Europeans.
    bioRxiv, 2024
    DOI

2023

  1. Testing Times: Challenges in Disentangling Admixture Histories in Recent and Complex Demographies.
    bioRxiv, 2023
    DOI
  2. Modeling of African population history using f-statistics is biased when applying all previously proposed SNP ascertainment schemes.
    PLoS Genet, 2023
    DOI
  3. Reanalyzing the genetic history of Kra-Dai speakers from Thailand and new insights into their genetic interactions beyond Mainland Southeast Asia.
    Sci Rep, 2023
    DOI
  4. On the limits of fitting complex models of population history to f-statistics.
    Elife, 2023
    DOI
  5. Modeling of African population history using f -statistics can be highly biased and is not addressed by previously suggested SNP ascertainment schemes.
    bioRxiv, 2023
    DOI
  6. Water masses shape pico-nano eukaryotic communities of the Weddell Sea.
    Commun Biol, 2023
    DOI

2022

  1. Ancient DNA from Protohistoric Period Cambodia indicates that South Asians admixed with local populations as early as 1st-3rd centuries CE.
    Sci Rep, 2022
    DOI
  2. Indian genetic heritage in Southeast Asian populations.
    PLoS Genet, 2022
    DOI

2020

  1. Environmental determinants of the distribution of planktonic diplonemids and kinetoplastids in the oceans.
    Environ Microbiol, 2020
    DOI
  2. Sergentomyia schwetzi: Salivary gland transcriptome, proteome and enzymatic activities in two lineages adapted to different blood sources.
    PLoS One, 2020
    DOI
  3. Evolution of metabolic capabilities and molecular features of diplonemids, kinetoplastids, and euglenids.
    BMC Biol, 2020
    DOI

2019

  1. Palaeo-Eskimo genetic ancestry and the peopling of Chukotka and North America.
    Nature, 2019
    DOI
  2. The genetic history of admixture across inner Eurasia.
    Nat Ecol Evol, 2019
    DOI

2018

  1. Ancient genomes document multiple waves of migration in Southeast Asian prehistory.
    Science, 2018
    DOI
  2. Extensive molecular tinkering in the evolution of the membrane attachment mode of the Rheb GTPase.
    Sci Rep, 2018
    DOI
  3. Contrasting maternal and paternal genetic variation of hunter-gatherer groups in Thailand.
    Sci Rep, 2018
    DOI
  4. Neobodonids are dominant kinetoplastids in the global ocean.
    Environ Microbiol, 2018
    DOI
  5. Trypanosomatid mitochondrial RNA editing: dramatically complex transcript repertoires revealed with a dedicated mapping tool.
    Nucleic Acids Res, 2018
    DOI
  6. Dispersals of the Siberian Y-chromosome haplogroup Q in Eurasia.
    Mol Genet Genomics, 2018
    DOI

2017

  1. Archaeogenomic analysis of the first steps of Neolithization in Anatolia and the Aegean.
    Proc Biol Sci, 2017
    DOI
  2. Extensive flagellar remodeling during the complex life cycle of Paratrypanosoma, an early-branching trypanosomatid.
    Proc Natl Acad Sci U S A, 2017
    DOI
  3. Genome of Ca. Pandoraea novymonadis, an Endosymbiotic Bacterium of the Trypanosomatid Novymonas esmeraldas.
    Front Microbiol, 2017
    DOI
  4. Genome sequencing reveals metabolic and cellular interdependence in an amoeba-kinetoplastid symbiosis.
    Sci Rep, 2017
    DOI
  5. Molecular mechanisms of thermal resistance of the insect trypanosomatid Crithidia thermophila.
    PLoS One, 2017
    DOI

2016

  1. Extreme Diversity of Diplonemid Eukaryotes in the Ocean.
    Curr Biol, 2016
    DOI
  2. Toward high-resolution population genomics using archaeological samples.
    DNA Res, 2016
    DOI
  3. Pitfalls of the Geographic Population Structure (GPS) Approach Applied to Human Genetic History: A Case Study of Ashkenazi Jews.
    Genome Biol Evol, 2016
    DOI
  4. Genome of Leptomonas pyrrhocoris: a high-quality reference for monoxenous trypanosomatids and new insights into evolution of Leishmania.
    Sci Rep, 2016
    DOI
  5. Comparative Metabolism of Free-living Bodo saltans and Parasitic Trypanosomatids.
    J Eukaryot Microbiol, 2016
    DOI
  6. Genomic study of the Ket: a Paleo-Eskimo-related ethnic group with significant ancient North Eurasian ancestry.
    Sci Rep, 2016
    DOI

2015

  1. Gene Loss and Error-Prone RNA Editing in the Mitochondrion of Perkinsela, an Endosymbiotic Kinetoplastid.
    mBio, 2015
    DOI
  2. Unexpectedly Streamlined Mitochondrial Genome of the Euglenozoan Euglena gracilis.
    Genome Biol Evol, 2015
    DOI
  3. Leptomonas seymouri: Adaptations to the Dixenous Life Cycle Analyzed by Genome Sequencing, Transcriptome Profiling and Co-infection with Leishmania donovani.
    PLoS Pathog, 2015
    DOI
  4. Chromerid genomes reveal the evolutionary path from photosynthetic algae to obligate intracellular parasites.
    Elife, 2015
    DOI
  5. Differential Evolution approach to detect recent admixture.
    BMC Genomics, 2015
    DOI
  6. Divergent mitochondrial respiratory chains in phototrophic relatives of apicomplexan parasites.
    Mol Biol Evol, 2015
    DOI

2014

  1. The streamlined genome of Phytomonas spp. relative to human pathogenic kinetoplastids reveals a parasite tailored for plants.
    PLoS Genet, 2014
    DOI

2013

  1. Paratrypanosoma is a novel early-branching trypanosomatid.
    Curr Biol, 2013
    DOI
  2. Split photosystem protein, linear-mapping topology, and growth of structural complexity in the plastid genome of Chromera velia.
    Mol Biol Evol, 2013
    DOI

2012

  1. Re-evaluating the green versus red signal in eukaryotes with secondary plastid of red algal origin.
    Genome Biol Evol, 2012
    DOI
  2. Lack of evidence for integration of Trypanosoma cruzi minicircle DNA in South American human genomes.
    Flegontov P Flegontova O
    Int J Parasitol, 2012
    DOI
  3. Aerobic kinetoplastid flagellate Phytomonas does not require heme for viability.
    Proc Natl Acad Sci U S A, 2012
    DOI

2011

  1. [The epidemiological features of visceral leishmaniasis, revealed on examination of children by polymerase chain reaction, in the Papsky District, Namangan Region, Uzbekistan].
    Med Parazitol (Mosk), 2011
    DOI
  2. Gene fragmentation: a key to mitochondrial genome evolution in Euglenozoa?
    Curr Genet, 2011
    DOI

2009

  1. Selective amplification of maxicircle classes during the life cycle of Leishmania major.
    Mol Biochem Parasitol, 2009
    DOI

2006

  1. Radically different maxicircle classes within the same kinetoplast: an artefact or a novel feature of the kinetoplast genome?
    Kolesnikov AA Flegontov PN
    Kinetoplastid Biol Dis, 2006
    DOI
  2. Conserved repeats in the kinetoplast maxicircle divergent region of Leishmania sp. and Leptomonas seymouri.
    Mol Genet Genomics, 2006
    DOI
  3. The Leishmania major maxicircle divergent region is variable in different isolates and cell types.
    Kolesnikov AA Flegontov PN
    Mol Biochem Parasitol, 2006
    DOI