publications

publications by categories in reversed chronological order. generated by jekyll-scholar.

2025

  1. Long shared haplotypes identify the southern Urals as a primary source for the 10th-century Hungarians.
    Gyuris B, Vyazov L, Türk A, Flegontov P, Szeifert B, and 31 more authors
    Cell, 2025
    DOI
  2. Ancient DNA reveals the prehistory of the Uralic and Yeniseian peoples.
    Zeng TC, Vyazov LA, Kim A, Flegontov P, Sirak K, and 66 more authors
    Nature, 2025
    DOI
  3. Genomic Analysis of Hair Sheep From West/Central Africa Reveals Unique Genetic Diversity and Ancestral Links to Breed Formation in the Caribbean.
    Wiener P, Friedrich J, Marr MM, Simo G, Tanya VN, and 9 more authors
    Mol Ecol, 2025
    DOI
  4. Performance of qpAdm-based screens for genetic admixture on graph-shaped histories and stepping stone landscapes.
    Flegontova O, Işıldak U, Yüncü E, Williams MP, Huber CD, and 4 more authors
    Genetics, 2025
    DOI
  5. Author Correction: The genetic origin of the Indo-Europeans.
    Lazaridis I, Patterson N, Anthony D, Vyazov L, Fournier R, and 89 more authors
    Nature, 2025
    DOI
  6. The genetic origin of the Indo-Europeans.
    Lazaridis I, Patterson N, Anthony D, Vyazov L, Fournier R, and 89 more authors
    Nature, 2025
    DOI
  7. Performance of qpAdm-based screens for genetic admixture on admixture-graph-shaped histories and stepping-stone landscapes.
    Flegontova O, Işıldak U, Yüncü E, Williams MP, Huber CD, and 4 more authors
    bioRxiv, 2025
    DOI

2024

  1. Long shared haplotypes identify the Southern Urals as a primary source for the 10th century Hungarians.
    Gyuris B, Vyazov L, Türk A, Flegontov P, Szeifert B, and 31 more authors
    bioRxiv, 2024
    DOI
  2. Testing times: disentangling admixture histories in recent and complex demographies using ancient DNA.
    Williams MP, Flegontov P, Maier R, and Huber CD
    Genetics, 2024
    DOI
  3. The Genetic Origin of the Indo-Europeans.
    Lazaridis I, Patterson N, Anthony D, Vyazov L, Fournier R, and 89 more authors
    bioRxiv, 2024
    DOI

2023

  1. Testing Times: Challenges in Disentangling Admixture Histories in Recent and Complex Demographies.
    Williams MP, Flegontov P, Maier R, and Huber CD
    bioRxiv, 2023
    DOI
  2. Modeling of African population history using f-statistics is biased when applying all previously proposed SNP ascertainment schemes.
    Flegontov P, Işıldak U, Maier R, Yüncü E, Changmai P, and 1 more author
    PLoS Genet, 2023
    DOI
  3. Reanalyzing the genetic history of Kra-Dai speakers from Thailand and new insights into their genetic interactions beyond Mainland Southeast Asia.
    Changmai P, Phongbunchoo Y, Kočí J, and Flegontov P
    Sci Rep, 2023
    DOI
  4. On the limits of fitting complex models of population history to f-statistics.
    Maier R, Flegontov P, Flegontova O, Işıldak U, Changmai P, and 1 more author
    Elife, 2023
    DOI
  5. Modeling of African population history using f -statistics can be highly biased and is not addressed by previously suggested SNP ascertainment schemes.
    Flegontov P, Işıldak U, Maier R, Yüncü E, Changmai P, and 1 more author
    bioRxiv, 2023
    DOI
  6. Water masses shape pico-nano eukaryotic communities of the Weddell Sea.
    Flegontova O, Flegontov P, Jachníková N, Lukeš J, and Horák A
    Commun Biol, 2023
    DOI

2022

  1. Ancient DNA from Protohistoric Period Cambodia indicates that South Asians admixed with local populations as early as 1st-3rd centuries CE.
    Changmai P, Pinhasi R, Pietrusewsky M, Stark MT, Ikehara-Quebral RM, and 2 more authors
    Sci Rep, 2022
    DOI
  2. Indian genetic heritage in Southeast Asian populations.
    Changmai P, Jaisamut K, Kampuansai J, Kutanan W, Altınışık NE, and 7 more authors
    PLoS Genet, 2022
    DOI

2020

  1. Environmental determinants of the distribution of planktonic diplonemids and kinetoplastids in the oceans.
    Flegontova O, Flegontov P, Londoño PAC, Walczowski W, Šantić D, and 3 more authors
    Environ Microbiol, 2020
    DOI
  2. Sergentomyia schwetzi: Salivary gland transcriptome, proteome and enzymatic activities in two lineages adapted to different blood sources.
    Polanska N, Ishemgulova A, Volfova V, Flegontov P, Votypka J, and 2 more authors
    PLoS One, 2020
    DOI
  3. Evolution of metabolic capabilities and molecular features of diplonemids, kinetoplastids, and euglenids.
    Butenko A, Opperdoes FR, Flegontova O, Horák A, Hampl V, and 5 more authors
    BMC Biol, 2020
    DOI

2019

  1. Palaeo-Eskimo genetic ancestry and the peopling of Chukotka and North America.
    Flegontov P, Altınışık NE, Changmai P, Rohland N, Mallick S, and 30 more authors
    Nature, 2019
    DOI
  2. The genetic history of admixture across inner Eurasia.
    Jeong C, Balanovsky O, Lukianova E, Kahbatkyzy N, Flegontov P, and 44 more authors
    Nat Ecol Evol, 2019
    DOI

2018

  1. Ancient genomes document multiple waves of migration in Southeast Asian prehistory.
    Lipson M, Cheronet O, Mallick S, Rohland N, Oxenham M, and 29 more authors
    Science, 2018
    DOI
  2. Extensive molecular tinkering in the evolution of the membrane attachment mode of the Rheb GTPase.
    Záhonová K, Petrželková R, Valach M, Yazaki E, Tikhonenkov DV, and 11 more authors
    Sci Rep, 2018
    DOI
  3. Contrasting maternal and paternal genetic variation of hunter-gatherer groups in Thailand.
    Kutanan W, Kampuansai J, Changmai P, Flegontov P, Schröder R, and 4 more authors
    Sci Rep, 2018
    DOI
  4. Neobodonids are dominant kinetoplastids in the global ocean.
    Flegontova O, Flegontov P, Malviya S, Poulain J, Vargas C, and 3 more authors
    Environ Microbiol, 2018
    DOI
  5. Trypanosomatid mitochondrial RNA editing: dramatically complex transcript repertoires revealed with a dedicated mapping tool.
    Gerasimov ES, Gasparyan AA, Kaurov I, Tichý B, Logacheva MD, and 5 more authors
    Nucleic Acids Res, 2018
    DOI
  6. Dispersals of the Siberian Y-chromosome haplogroup Q in Eurasia.
    Huang YZ, Pamjav H, Flegontov P, Stenzl V, Wen SQ, and 7 more authors
    Mol Genet Genomics, 2018
    DOI

2017

  1. Archaeogenomic analysis of the first steps of Neolithization in Anatolia and the Aegean.
    Kılınç GM, Koptekin D, Atakuman Ç, Sümer AP, Dönertaş HM, and 9 more authors
    Proc Biol Sci, 2017
    DOI
  2. Extensive flagellar remodeling during the complex life cycle of Paratrypanosoma, an early-branching trypanosomatid.
    Skalický T, Dobáková E, Wheeler RJ, Tesařová M, Flegontov P, and 5 more authors
    Proc Natl Acad Sci U S A, 2017
    DOI
  3. Genome of Ca. Pandoraea novymonadis, an Endosymbiotic Bacterium of the Trypanosomatid Novymonas esmeraldas.
    Kostygov AY, Butenko A, Nenarokova A, Tashyreva D, Flegontov P, and 2 more authors
    Front Microbiol, 2017
    DOI
  4. Genome sequencing reveals metabolic and cellular interdependence in an amoeba-kinetoplastid symbiosis.
    Tanifuji G, Cenci U, Moog D, Dean S, Nakayama T, and 15 more authors
    Sci Rep, 2017
    DOI
  5. Molecular mechanisms of thermal resistance of the insect trypanosomatid Crithidia thermophila.
    Ishemgulova A, Butenko A, Kortišová L, Boucinha C, Grybchuk-Ieremenko A, and 14 more authors
    PLoS One, 2017
    DOI

2016

  1. Extreme Diversity of Diplonemid Eukaryotes in the Ocean.
    Flegontova O, Flegontov P, Malviya S, Audic S, Wincker P, and 4 more authors
    Curr Biol, 2016
    DOI
  2. Toward high-resolution population genomics using archaeological samples.
    Morozova I, Flegontov P, Mikheyev AS, Bruskin S, Asgharian H, and 10 more authors
    DNA Res, 2016
    DOI
  3. Pitfalls of the Geographic Population Structure (GPS) Approach Applied to Human Genetic History: A Case Study of Ashkenazi Jews.
    Flegontov P, Kassian A, Thomas MG, Fedchenko V, Changmai P, and 1 more author
    Genome Biol Evol, 2016
    DOI
  4. Genome of Leptomonas pyrrhocoris: a high-quality reference for monoxenous trypanosomatids and new insights into evolution of Leishmania.
    Flegontov P, Butenko A, Firsov S, Kraeva N, Eliáš M, and 22 more authors
    Sci Rep, 2016
    DOI
  5. Comparative Metabolism of Free-living Bodo saltans and Parasitic Trypanosomatids.
    Opperdoes FR, Butenko A, Flegontov P, Yurchenko V, and Lukeš J
    J Eukaryot Microbiol, 2016
    DOI
  6. Genomic study of the Ket: a Paleo-Eskimo-related ethnic group with significant ancient North Eurasian ancestry.
    Flegontov P, Changmai P, Zidkova A, Logacheva MD, Altınışık NE, and 13 more authors
    Sci Rep, 2016
    DOI

2015

  1. Gene Loss and Error-Prone RNA Editing in the Mitochondrion of Perkinsela, an Endosymbiotic Kinetoplastid.
    David V, Flegontov P, Gerasimov E, Tanifuji G, Hashimi H, and 6 more authors
    mBio, 2015
    DOI
  2. Unexpectedly Streamlined Mitochondrial Genome of the Euglenozoan Euglena gracilis.
    Dobáková E, Flegontov P, Skalický T, and Lukeš J
    Genome Biol Evol, 2015
    DOI
  3. Leptomonas seymouri: Adaptations to the Dixenous Life Cycle Analyzed by Genome Sequencing, Transcriptome Profiling and Co-infection with Leishmania donovani.
    Kraeva N, Butenko A, Hlaváčová J, Kostygov A, Myškova J, and 8 more authors
    PLoS Pathog, 2015
    DOI
  4. Chromerid genomes reveal the evolutionary path from photosynthetic algae to obligate intracellular parasites.
    Woo YH, Ansari H, Otto TD, Klinger CM, Kolisko M, and 38 more authors
    Elife, 2015
    DOI
  5. Differential Evolution approach to detect recent admixture.
    Kozlov K, Chebotarev D, Hassan M, Triska M, Triska P, and 2 more authors
    BMC Genomics, 2015
    DOI
  6. Divergent mitochondrial respiratory chains in phototrophic relatives of apicomplexan parasites.
    Flegontov P, Michálek J, Janouškovec J, Lai DH, Jirků M, and 7 more authors
    Mol Biol Evol, 2015
    DOI

2014

  1. The streamlined genome of Phytomonas spp. relative to human pathogenic kinetoplastids reveals a parasite tailored for plants.
    Porcel BM, Denoeud F, Opperdoes F, Noel B, Madoui MA, and 24 more authors
    PLoS Genet, 2014
    DOI

2013

  1. Paratrypanosoma is a novel early-branching trypanosomatid.
    Flegontov P, Votýpka J, Skalický T, Logacheva MD, Penin AA, and 6 more authors
    Curr Biol, 2013
    DOI
  2. Split photosystem protein, linear-mapping topology, and growth of structural complexity in the plastid genome of Chromera velia.
    Janouskovec J, Sobotka R, Lai DH, Flegontov P, Koník P, and 7 more authors
    Mol Biol Evol, 2013
    DOI

2012

  1. Re-evaluating the green versus red signal in eukaryotes with secondary plastid of red algal origin.
    Burki F, Flegontov P, Oborník M, Cihlár J, Pain A, and 2 more authors
    Genome Biol Evol, 2012
    DOI
  2. Lack of evidence for integration of Trypanosoma cruzi minicircle DNA in South American human genomes.
    Flegontova O, Lukeš J, and Flegontov P
    Int J Parasitol, 2012
    DOI
  3. Aerobic kinetoplastid flagellate Phytomonas does not require heme for viability.
    Kořený L, Sobotka R, Kovářová J, Gnipová A, Flegontov P, and 4 more authors
    Proc Natl Acad Sci U S A, 2012
    DOI

2011

  1. [The epidemiological features of visceral leishmaniasis, revealed on examination of children by polymerase chain reaction, in the Papsky District, Namangan Region, Uzbekistan].
    Zhirenkina EN, Ponirovskiĭ EN, Strelkova MV, Morozov EN, Flegontov PN, and 10 more authors
    Med Parazitol (Mosk), 2011
    DOI
  2. Gene fragmentation: a key to mitochondrial genome evolution in Euglenozoa?
    Flegontov P, Gray MW, Burger G, and Lukeš J
    Curr Genet, 2011
    DOI

2009

  1. Selective amplification of maxicircle classes during the life cycle of Leishmania major.
    Flegontov PN, Zhirenkina EN, Gerasimov ES, Ponirovsky EN, Strelkova MV, and 1 more author
    Mol Biochem Parasitol, 2009
    DOI

2006

  1. Radically different maxicircle classes within the same kinetoplast: an artefact or a novel feature of the kinetoplast genome?
    Flegontov PN and Kolesnikov AA
    Kinetoplastid Biol Dis, 2006
    DOI
  2. Conserved repeats in the kinetoplast maxicircle divergent region of Leishmania sp. and Leptomonas seymouri.
    Flegontov PN, Guo Q, Ren L, Strelkova MV, and Kolesnikov AA
    Mol Genet Genomics, 2006
    DOI
  3. The Leishmania major maxicircle divergent region is variable in different isolates and cell types.
    Flegontov PN, Strelkova MV, and Kolesnikov AA
    Mol Biochem Parasitol, 2006
    DOI